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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgcaatcttctatatgtctttttacatcttccaatgaccttttacgggtttttgtagctaacttgatacggttgttttggcagCTGGAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTCATCATGACATTCCAAATGAGATTCCAATTCATTTACAGAAGATCCAATA

Basic information

species Arabidopsis thaliana
transcript AT1G03550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03550.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G169773_T02 (Zea mays), 3'ss of exon 4
-gtagtgcaatcttctatatgtctttttacatcttccaatgaccttttacgggtt---tttgtagctaact--tgatacggttgtt--------ttggcagCTGGAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTCATCATGACATTCCAAATGAGATTCCAATTCATTTACAGAAGATCCAATA
  || |  || ||  | | |  ||| || |   | |    | ||||||||  |||   | |||   | | |  | ||||  || ||        |||||||||||  ||||||||||||| |||||||||||    ||| | ||  | ||||||||||||||| | || ||||| ||||||||  | || | ||| || ||
actaat-taagctaatttgttgcttattgcccatgctgcagtccttttacctgttaggtctgtcttttaataataataccctttttcctttcgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCATCATGACATTTCGAACGAGATACCAATTCACCTGCAAAGGATGCAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035258|gb|DR331011.1|DR331011
EST:     GAGCTTAAAAGAAGAGAGGACGCAATAGCACGAA                         CTGGAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTC
genomic: GAGCTTAAAAGAAGAGAGGACGCAATAGCACGAAgtagtgcaat ... gttttggcagCTGGAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaatgaccttttacgggtttttgtagctaacttgatacggttgttttggcagCTGGAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTCATCATGACATTCCAAATGAGATTCCAATTCATTTACAGAAGATCCAATA
                                           ttgtttt  CT-rich tract
                    tttttgta  TA-rich tract