Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatggtgttgacctactttcttttgagtattgtcactgggattttaagggattatgactcacacgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttgtatcttagTTGAGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAGTCAGTCGTGATTACATCAGGCACATTGAGCCCAATTGATCTTTACC

Basic information

species Arabidopsis thaliana
transcript AT1G03190.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ30044 (Selaginella moellendorffii), 3'ss of exon 3
gtaaatatggtgttgacctactttcttttgagtattgtcactgggattttaagggattatgactcacacgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttgt---atcttagTTGAGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAGTCAGTCGTGATTACATCAGGCACATTGAGCCCAATTGATCTTTACC
                                                                   ||||   |  | | | ||   |  ||    ||  |       | |    ||  |||||    |   || | |||||||  ||||||||||| || |||||||| |||||||| ||||| ||||| || || || || ||||| || || || || || ||||| ||||
-----------------------------------------------------------------gtacgtg--ttttcctgcttcgtttttttccgatcattcggaccaaacgcctcggtttgtttggttgcagCTAAGCTGTCTAGATGCGTCTCTCGCCATCAAACCCGTGTTTGACCGTTTTCAGTCCGTGGTAATAACTTCAGGAACGTTAAGTCCCATCGATCTCTACC

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ08988 (Selaginella moellendorffii), 3'ss of exon 3
gtaaatatggtgttgacctactttcttttgagtattgtcactgggattttaagggattatgactcacacgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttgtatcttagTTGAGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAGTCAGTCGTGATTACATCAGGCACATTGAGCCCAATTGATCTTTACC
                                                                |     |   ||||  |||||     ||    | | | | |  |  | |      | ||   |   || | |||||||  ||||||||||| || |||||||| |||||||| ||||| ||||| || || || || ||||| || || || || || ||||| ||||
-------------------------------------------------------------gtacgtgttttcctgct-tcgtttttccgatc---attcggaccaaacgcctcgggtttgtttggttgcagCTAAGCTGTCTAGATGCGTCTCTCGCCATCAAACCCGTGTTTGACCGTTTTCAGTCCGTGGTAATAACTTCAGGAACGTTAAGTCCCATCGATCTCTACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccgtttgaataattgagaattgtatctgaaacatatatccttttgtatcttagTTGAGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAGTCAGTCGTGATTACATCAGGCACATTGAGCCCAATTGATCTTTACC
                                       tccttttgtatctt  CT-rich tract
         aataattgagaatt  TA-rich tract