Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagtctaatccactaatgcacaatgtcatacctttcttgctcagattggtcttatagtgattctgtttgccatcacagGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGA

Basic information

species Arabidopsis thaliana
transcript AT1G03110.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03110.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G131998_T04 (Zea mays), 3'ss of exon 4
--gtaagctagtctaatccactaatgcacaa-tgtca-tacctttcttgctcagattggtcttatagtgattctgt--ttgccatcacagGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGA
  ||   ||  |||  | |||| ||  ||   | ||| |   | |     |  || |  |  | |  |  |  ||   ||    |  ||||| ||  | || || ||||| |||||| ||||||| |||||||||||||| ||||| ||||| ||| ||||
gtgtcttctgttctt-tgcactgattgacggctatcagtggatcttaaatttggacttattctcttattgtgttgcaattaattttgcagGTCACATTATTCCCAAAGAATCCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA

upper sequence: AT1G03110.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G131998_T02 (Zea mays), 3'ss of exon 5
----gtaagctagtctaatccactaatgcacaa-tgtca-tacctttcttgctcagattggtcttatagtgattctgt--ttgccatcacagGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGA
    ||   ||  |||  | |||| ||  ||   | ||| |   | |     |  || |  |  | |  |  |  ||   ||    |  ||||| ||  | || || ||||| |||||| ||||||| |||||||||||||| ||||| ||||| ||| ||||
gtgtgtcttctgttctt-tgcactgattgacggctatcagtggatcttaaatttggacttattctcttattgtgttgcaattaattttgcagGTCACATTATTCCCAAAGAATCCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA

upper sequence: AT1G03110.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv07s0151g00790.t01 (Vitis vinifera), 3'ss of exon 4
-------gtaagctagtctaatccactaatgcacaatgtcatacctttcttgctcagattggtcttatagtgattctgtttgccatcacagGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGA
        |  ||   | ||||| |  |||| | ||| |  | | ||| |  ||   |    | || |  |  || | | |||    ||||||  | || || |||||||||||  |||| || |||||||| || ||||||||||||||||| ||  ||||
gtactccctttgcccatttaatcaatgaatggataatttggt-cgtttatgtcttttacacatttttttttc-ttttttctgctg--acagGTTTCCGTGTTCCCCAAGAAGCCCTTAGATGGAGCTCATGAGATCCAGAGTTTTTGTCTTGGTCACACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcatacctttcttgctcagattggtcttatagtgattctgtttgccatcacagGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGA
                          tcttata  TA-rich tract