1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtaataaagctaatgagaacattgaagaatattttatgcaatgatgggctttgataatatttttccttcataagctttatctctggtcaactatggcagGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAG
species | Arabidopsis thaliana |
transcript | AT1G03040.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAG GTCCTGAGCATEST: gi|116436446|gb|EG479038.1|EG479038
genomic: TGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAGgtaaacaccc ... actatggcagGTCCTGAGCAT
EST: TGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAG GTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTCEST: gi|116436445|gb|EG479037.1|EG479037
genomic: TGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAGgtaaacaccc ... actatggcagGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTC
EST: TGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAG GTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTCEST: gi|125300139|gb|EL314224.1|EL314224
genomic: TGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTTAAGgtaaacaccc ... actatggcagGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTC
EST: GTTTCTCAGGCTCCAAGTTAAG GTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTC
genomic: GTTTCTCAGGCTCCAAGTTAAGgtaaacaccc ... actatggcagGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTC
tgggctttgataatatttttccttcataagctttatctctggtcaactatggcagGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAG
ctttgat putative branch site (score: 5)
tttgataatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaataaagctaatgagaacattgaagaatattttatgcaatgatgggctttgataatatttttccttcataagctttatctctggtcaactatggcagGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAG
- - - -aagctaa
- - - - - - - -gagaaca
- - - - - - - - - - - - gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctctg