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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggttttaatctcttagcttccactatctctgtcattaacccaatgatttactgactcttcttatgttttgtttcaaattatctccctctttattgcactaaagatcaggtgaaacatcatttcatttgagTGGGTTATATATTGAACAATGTGTTACTCTGGTCGACGATAACTTTATGGTTTTGGTTTCTTTTGGGTCATTGTGGTTCTTGCTGGGCATTTGGTGCTGT

Basic information

species Arabidopsis thaliana
transcript AT1G02300.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02300.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA19G41120.1 (Glycine max), 3'ss of exon 5
gtcggttttaatctcttagcttccactatctctgtcattaacccaatgatttactgactcttcttatgttttgtttcaaattatctccctctttattgcactaaagatcaggtgaaacatcatttcatttgagTGGGTTATATATTGAACAATGTGTTACTCTGGTCGACGATAACTTTATGGTTTTGGTTTCTTTTGGGTCATTGT--GGTTCTTGCTGGGCATTTGGTGCTGT-
                                                            | || || ||||   ||| | || |  | |  | | | || | ||    ||||  ||     |||||  |||      |    ||    ||  | || ||| ||||    | |     | ||||  ||       |||  |||||||  | |   |  ||      |  || ||| 
--------------------------------------------------------gtaatcctcatatttt--ctcacactaacatctt--taaatacattcaattcaaggttcaaagagttttcagctgatccttgtgctgatgattca--gGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTG-------TTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTA

upper sequence: AT1G02300.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA03G38520.1 (Glycine max), 3'ss of exon 5
gtcggttttaatctcttagcttccactatctctgtcattaacccaatgatttactgactcttcttatgttttgtttcaaattatctccctctttattgcactaaagat-caggtgaaacatcatttcatttgagTGGGTTATA-TATTGAACAATGTGTTACTCTGGTCGACGATAACTTTATGGTTTTGGTTTCTTTTGGGTCATTGTGGTTCTTGCTGGGCATTTGGTGCTGT
                |      ||   | |||  || | ||    | |  |||  | ||    |       ||||| |  |   ||| || |  |||  || | ||| ||||   |   |  ||    ||| |    |  |  | |||||  ||       ||   |   |  | | |||   |||                                                
---------------gtgatcctcatattttctcacactgacatctttaaatac--attcaatgttaaaagagtttctagctga-tccttcatccttgtgctgatgattcagGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTT------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatctccctctttattgcactaaagatcaggtgaaacatcatttcatttgagTGGGTTATATATTGAACAATGTGTTACTCTGGTCGACGATAACTTTATGGTTTTGGTTTCTTTTGGGTCATTGTGGTTCTTGCTGGGCATTTGGTGCTGT
                    cactaaa  putative branch site (score: 2)
                                            tttcattt  putative PPT
                                           atttcattt  TA-rich tract