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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggagaagcctgcaatataggagactttatttccttcaggttaaactgagcctactctgtttatgttatgaatctgctgctttagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G01820.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01820.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 3'ss of exon 4
-----------gttaggagaagcctgcaatataggagactttatttccttcaggttaaactgagcctactctgtttatgttatgaatctgctgctt-----tagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG
                |   |||       |||      || | ||  ||   || | |   |  || |       |  | | | || || || ||     ||| |||||||||| ||||||    ||||  | ||||| |||||||||||||||||||| ||  ||||| || |||||||||||
gttcgttttgcacctcgcttagctaatttcatacattctttaaattggtttctgtgagaaatattctccagaagagacttgaagcatttgttgattgtaactagAACAAAGAACGAGCTGAGCAAATTGGCAGGATATCTCTTTTCTGTTGGATGGGTTCATCAATTTGCGCAACCTTGGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125166579|gb|EL192309.1|EL192309
EST:     ACTGGGATTTACAAG                         GACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTTGATG
genomic: ACTGGGATTTACAAGgttaggagaa ... gctgctttagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATG
EST: gi|86081227|gb|DR376984.1|DR376984
EST:     TGTGTGGCTTGGCAGGACTGGGATTTACAAG                         GACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATG
genomic: TGTGTGGCTTGGCAGGACTGGGATTTACAAGgttaggagaa ... gctgctttagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATG
EST: gi|163976914|gb|ES193346.1|ES193346
EST:     TCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAG                         GACAAAGAACGTGCTGAGATTCTTG
genomic: TCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGgttaggagaa ... gctgctttagGACAAAGAACGTGCTGAGATTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttcaggttaaactgagcctactctgtttatgttatgaatctgctgctttagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG
                                              ctgcttt  CT-rich tract
                             tttatgttatgaat  TA-rich tract