1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagatgagaacaaagtttattttttatatgaatggttttcttatagcaaaatcaatctcaacaagtttgaattctctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCA
species | Arabidopsis thaliana |
transcript | AT1G01050.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGCAAGGTCAAATACAAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTACCCEST: gi|152033655|gb|BP561551.2|BP561551
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCC
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTEST: gi|86084748|gb|DR380507.1|DR380507
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTT
EST: GACTCATCAAG G-TGATCGTA-TCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTEST: gi|125127475|gb|EL172292.1|EL172292
genomic: GACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTT
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTAEST: gi|124920473|gb|EH994184.1|EH994184
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTA
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTACACAAEST: gi|47828474|gb|CK118158.1|CK118158
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCT-CACAA
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTEST: gi|124751380|gb|EH841510.1|EH841510
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTT
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTEST: gi|124779662|gb|EH869605.1|EH869605
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCT
EST: ACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTAACCCTCACAACTATGGTTTEST: gi|124761394|gb|EH851524.1|EH851524
genomic: ACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTA-CCCTCACAACTATGGTTT
EST: CAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTEST: gi|164215294|gb|ES070901.1|ES070901
genomic: CAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTT
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTEST: gi|125231155|gb|EL245240.1|EL245240
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTT
EST: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG GTTGATCGTATTCTCTACTCAT
genomic: AAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGgttagatgag ... tctcattcagGTTGATCGTATTCTCTACTCAT
gaatggttttcttatagcaaaatcaatctcaacaagtttgaattctctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCA
ttctctcattc CT-rich tract
ttttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatgagaacaaagtttattttttatatgaatggttttcttatagcaaaatcaatctcaacaagtttgaattctctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA