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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttatttgttttatgttaatatctgtgtaatgttgttgtgcatggtatctgacttttcccttgcttctaagcagCTGTTGATATATATGCTGGTGTTGCTACGTCACTAGCTGATAGGAAGAAAGGCAGTCAGTTGACAGAACTTTTCAAAAACATTAAGGGAACAATCCAGGA

Basic information

species Arabidopsis thaliana
transcript AT2G25730.2
intron # 32
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25730.2 (Arabidopsis thaliana), 3'ss of exon 32
lower sequence: LOC_Os01g40990.2 (Oryza sativa), 3'ss of exon 34
----------------------gtgcttatttgttttatgttaatat-ctgtgtaatg-ttgttgtg--catggtatctg---act----tttcccttgcttctaagcagCTGTTGATATATATGCTGGTGTTGCTACGTCACTAGCTGATAGGAAGAAAGGCAGTCAGTTGACAGAACTTTTCAAAAACATTAAGGGAACAATCCAGGA
                      |  | || || | |    ||||||| |   |  ||| || | |||  ||||| ||||    |||    |         ||||   ||||||||||||||||||||||||| ||  | || || || || || || |||||  | || ||||| ||  |||| || ||||| |  ||||| ||  | ||
gtacttattgaaatcaatatttgctcctaattttgtggaattaatattccaagatatgcttatcgtggacatggaatctacacactcaagtactttccatttctttacagCTGTTGATATATATGCTGGTGTGGCAGCATCCCTTGCAGAAAGAAAAAAAGGTGGCCAATTGACTGAGTTTTTGAAGAACATAAGAGGAACCATAGATGA

upper sequence: AT2G25730.2 (Arabidopsis thaliana), 3'ss of exon 32
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 3'ss of exon 35
--------------------------------gtgcttatttgttttatgtta-atatctgtgtaatgttgttgtg-catggtatctgactt----ttcccttgcttctaagcagCTGTTGATATATATGCTGGTGTTGCTACGTCACTAGCTGATAGGAAGAAAGGCAGTCAGTTGACAGAACTTTTCAAAAACATTAAGGGAACAATCCAGGA
                                ||  | |||||||| ||||   | ||  |  | |  ||| |     ||  | | |   ||    ||   ||  || |  |||||||||||||||||||||||||||||| | ||||| ||||| || || || ||  | || ||||||||| | |||| |||||| || || || ||| | ||
gtagccatagcattgtgaatttcttgtttgaagta-tcatttgtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcagCTGTTGATATATATGCTGGTGTTGCTGCATCACTTGCTGAGAGAAAAAAGGGTGGGCAATTGACAGAATTCTTCAGAAACATCAAAGGCACTATCGATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgtgtaatgttgttgtgcatggtatctgacttttcccttgcttctaagcagCTGTTGATATATATGCTGGTGTTGCTACGTCACTAGCTGATAGGAAGAAAGGCAGTCAGTTGACAGAACTTTTCAAAAACATTAAGGGAACAATCCAGGA
                           atctgac  putative branch site (score: 3)
                            tctgacttttcccttg  CT-rich tract
        taatgtt  TA-rich tract