Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacatcttaattgcttatgcatttgtcgctgagaatataaaatctatgatagagaggataattttcttatgtcattgtcgttccagGTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATGAGAGAGTTCTACCCTCTGCTCACGAGGCTCGTTTGCTGTGAACAG

Basic information

species Arabidopsis thaliana
transcript AT3G43300.2
intron # 31
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059723|gb|DR355480.1|DR355480
EST:     ACATGGATGTTCATCGGGTACTGGAGCTACGTTCTCCCGTGATTGTGAAG                         GTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATG
genomic: ACATGGATGTTCATCGGGTACTGGAGCTACGTTCTCCCGTGATTGTGAAGgtaatacatc ... gtcgttccagGTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATG
EST: gi|124999764|gb|EL072033.1|EL072033
EST:     GTTCTCCCGTGATTGTGAAG                         GTTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACAT
genomic: GTTCTCCCGTGATTGTGAAGgtaatacatc ... gtcgttccagG-TTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACAT
EST: gi|125171317|gb|EL194269.1|EL194269
EST:     AGCTACGTTCTCCCGTGATTGTGAAG                         GTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATG
genomic: AGCTACGTTCTCCCGTGATTGTGAAGgtaatacatc ... gtcgttccagGTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATG
EST: gi|125249308|gb|EL263393.1|EL263393
EST:     TGTTCATCGGGTACTGGAGCTACGTTCTCCCGTGATTGTGAAG                         GTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATG
genomic: TGTTCATCGGGTACTGGAGCTACGTTCTCCCGTGATTGTGAAGgtaatacatc ... gtcgttccagGTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatataaaatctatgatagagaggataattttcttatgtcattgtcgttccagGTTTTGGAAGGCATGTGCTTCATGAACAACACAATATTCAGGAAGCACATGAGAGAGTTCTACCCTCTGCTCACGAGGCTCGTTTGCTGTGAACAG
                                              tcgttcc  CT-rich tract
     ataaaatctatgata  TA-rich tract