1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgttcgtcgtcttccatagctaagcctataatgtatccattaattataattaaagcctcaaagtttatgtccatgactcatcatctctttttgtttgtagAATCTCAAGAAAACAACAATCATCCTGAAGTCATTATTGAGGAAGCTTCAAGAACGATCGGGTTCAATGTTAGCTCATCGGATCTAAGCAATGATCACAG
species | Arabidopsis thaliana |
transcript | AT5G66730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ataattaaagcctcaaagtttatgtccatgactcatcatctctttttgtttgtagAATCTCAAGAAAACAACAATCATCCTGAAGTCATTATTGAGGAAGCTTCAAGAACGATCGGGTTCAATGTTAGCTCATCGGATCTAAGCAATGATCACAG
ctcatcatctcttttt CT-rich tract
aaagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcgtcgtcttccatagctaagcctataatgtatccattaattataattaaagcctcaaagtttatgtccatgactcatcatctctttttgtttgtagAATCTCAAGAAAACAACAATCATCCTGAAGTCATTATTGAGGAAGCTTCAAGAACGATCGGGTTCAATGTTAGCTCATCGGATCTAAGCAATGATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - -ccatagc
- - - - - - - - - - -aagccta
- - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaaa