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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttgtctattactttggcggtttccttgcatgctttattacaagatagaaatgtcctgacctggttaagattatttcacttgtagCATATGTGATGGTTGCAAATCTGCGATTGAATATGGAAGATCTGTTCATGCCTTGGGTGTTAATTGGCATCCTGAATGTTTCTGTTGTCGTTATTGCGAC

Basic information

species Arabidopsis thaliana
transcript AT5G66610.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876838|gb|AU237669.1|AU237669
EST:     GAAGATGGAAATCTTCCAAGGGTAGATCTCAACGTTAACCATCCTCATAG                         CATATGTGATGGTTGCAAATCTGCGATTGAATATGGAAGATCTGNTCATGC
genomic: GAAGATGGAAATCTTCCAAGGGTAGATCTCAACGTTAACCATCCTCATAGgtaagtgttt ... tcacttgtagCATATGTGATGGTTGCAAATCTGCGATTGAATATGGAAGATCTGTTCATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttattacaagatagaaatgtcctgacctggttaagattatttcacttgtagCATATGTGATGGTTGCAAATCTGCGATTGAATATGGAAGATCTGTTCATGCCTTGGGTGTTAATTGGCATCCTGAATGTTTCTGTTGTCGTTATTGCGAC
                       tcctgac  putative branch site (score: 2)
                                           tttcactt  putative PPT
                                  ttaagattatttca  TA-rich tract