1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tataaatgaaatgaagtgagtccaaagctgtttctattttcttactaaacctcttgtgagacagattatttgtttacggattttttctgacttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG
species | Arabidopsis thaliana |
transcript | AT5G66600.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAACCACGEST: gi|116429923|gb|EG472515.1|EG472515
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGEST: gi|116429925|gb|EG472517.1|EG472517
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGEST: gi|116429918|gb|EG472510.1|EG472510
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGEST: gi|116429924|gb|EG472516.1|EG472516
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGEST: gi|116429922|gb|EG472514.1|EG472514
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGEST: gi|116429904|gb|EG472496.1|EG472496
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: TAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAACCAATATCATTCAAACACGEST: gi|116429907|gb|EG472499.1|EG472499
genomic: TAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGEST: gi|116429909|gb|EG472501.1|EG472501
genomic: GAGATAAAACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
EST: AACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTG GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
genomic: AACCTCAAATAGTTCTCATGAAGCCTCTCAACGAATGAAGCTGgtgagtacta ... cttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACG
taaacctcttgtgagacagattatttgtttacggattttttctgacttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG
ttctgac putative branch site (score: 2)
agattatttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaatgaaatgaagtgagtccaaagctgtttctattttcttactaaacctcttgtgagacagattatttgtttacggattttttctgacttggtttagGACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA