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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaataatccctctaacaactaactaaataatgatttacaaaatgatcttctcttatctggaaatggatccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTGCTCCAACTTCTTGT

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 3'ss of exon 2
gtaag--caaataatccctctaacaactaactaaat---aatgatttaca---aaatgatcttctcttatc----tggaaatggatcctt--------ttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTGCTCCAACTTCTTGT
|| ||  |   |  || ||    |  || | | |||   | |  ||  ||    |  ||||| || |  ||      || |   ||| |          |  ||||||| ||||| |||||||| || |||||||| || ||    ||||||||||| || || ||||||||||||||| | |
gtcagtccccctcttctcttctcctccttattcaatctcattccttctcatcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTGTCAAAGGAGTCTGCTCCAACTTCCTCT

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G168143_T02 (Zea mays), 3'ss of exon 2
----gtaagcaaataatccctctaaca---actaactaaataatgatttacaaaatgatcttctcttatctgg--aaatggatccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTGCTCCAACTTCTTGT---------------------
    |||   |   |||| |||   |     ||  ||   | | |  | |    |  ||  ||  | || |     |     ||    ||||||| || || ||||||||||| ||  | ||||| || |||| ||||||||| || || || ||||||||||||||||| |                     
gtcagtagctagccaatctctcctgctttctctctctctctcaagtctgaatcgactattctccgtcattttcttgagcatttctgcctgcagGTCTCGCTGTGTGTCAAGAGGCTCATCTACACCAACGATGCCGGAGAGATCGTCAAAGGAGTCTGCTCCAACTTCTTATGTACGTCTACGTCTCTTCACA

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G168143_T01 (Zea mays), 3'ss of exon 2
----gtaagcaaataatccctctaac---aactaactaaataatgatttacaaaatgatcttctcttatctgg--aaatggatccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTGCTCCAACTTCTTGT
    |||   |   |||| |||   |     ||  ||   | | |  | |    |  ||  ||  | || |     |     ||    ||||||| || || ||||||||||| ||  | ||||| || |||| ||||||||| || || || ||||||||||||||||| |
gtcagtagctagccaatctctcctgctttctctctctctctcaagtctgaatcgactattctccgtcattttcttgagcatttctgcctgcagGTCTCGCTGTGTGTCAAGAGGCTCATCTACACCAACGATGCCGGAGAGATCGTCAAAGGAGTCTGCTCCAACTTCTTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051155|gb|DR346910.1|DR346910
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125031213|gb|EL103482.1|EL103482
EST:     AGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: AGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125161048|gb|EL188346.1|EL188346
EST:     GACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125215743|gb|EL229827.1|EL229827
EST:     CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124919950|gb|EH993688.1|EH993688
EST:     CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125276287|gb|EL290372.1|EL290372
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGA
EST: gi|86051164|gb|DR346919.1|DR346919
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTCAGTTTACACA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACT-AGTTTACACA
EST: gi|125272507|gb|EL286592.1|EL286592
EST:     TTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAAATGATGGCGGAGAGAT
genomic: TTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA-TGATGGCGGAGAGAT
EST: gi|124965691|gb|EL039858.1|EL039858
EST:     TTACTCTATCGCGTAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
genomic: TTACTCTATCGCG-AGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
EST: gi|164016842|gb|ES114970.1|ES114970
EST:     TCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125023279|gb|EL095548.1|EL095548
EST:     AGTAGTGCCATTGGTGACTTTGGAGACTTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGAT
genomic: AGTAGTGCCATTGGTGACTTTGGAGAC-TCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGAT
EST: gi|125319858|gb|EL333943.1|EL333943
EST:     TGCCATTGGTGACTTTGGAGACTCCAAGACC                         G-TTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124763004|gb|EH853134.1|EH853134
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|125010605|gb|EL082874.1|EL082874
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTA
EST: gi|125217054|gb|EL231137.1|EL231137
EST:     TGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124884255|gb|EH963157.1|EH963157
EST:     AGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAG
genomic: AGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAG
EST: gi|124768982|gb|EH859112.1|EH859112
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAAACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|124923251|gb|EL001463.1|EL001463
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|125250753|gb|EL264838.1|EL264838
EST:     TGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125215898|gb|EL229981.1|EL229981
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GATTCTCTCTGTGT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGT
EST: gi|124814684|gb|EH899550.1|EH899550
EST:     AGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: AGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051165|gb|DR346920.1|DR346920
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTC
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTC
EST: gi|124966814|gb|EL040892.1|EL040892
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGA
EST: gi|125073250|gb|EL137654.1|EL137654
EST:     ACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: ACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124714176|gb|EH805578.1|EH805578
EST:     TCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124738346|gb|EH829690.1|EH829690
EST:     GTGCCATTGGTGACTTTGGGGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125002239|gb|EL074508.1|EL074508
EST:     TTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125141517|gb|EL179018.1|EL179018
EST:     TAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124920854|gb|EH994530.1|EH994530
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125238886|gb|EL252971.1|EL252971
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACA
EST: gi|125135305|gb|EL175701.1|EL175701
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACNCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGT
EST: gi|125297901|gb|EL311986.1|EL311986
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGT
EST: gi|124779912|gb|EH869855.1|EH869855
EST:     GGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124830273|gb|EH914729.1|EH914729
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTGCACAAATGATGGCG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCG
EST: gi|124762106|gb|EH852236.1|EH852236
EST:     GGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125203417|gb|EL218371.1|EL218371
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATG
EST: gi|124978620|gb|EL051772.1|EL051772
EST:     TGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124857058|gb|EH941495.1|EH941495
EST:     TGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125209311|gb|EL224265.1|EL224265
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
EST: gi|86051157|gb|DR346912.1|DR346912
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTC
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTC
EST: gi|124904949|gb|EH979029.1|EH979029
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
EST: gi|124971157|gb|EL044943.1|EL044943
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGG
EST: gi|124925021|gb|EL003053.1|EL003053
EST:     CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACAACAAATGATGGCGGAGAGAT
genomic: CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACA-CAAATGATGGCGGAGAGAT
EST: gi|86051162|gb|DR346917.1|DR346917
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125015255|gb|EL087524.1|EL087524
EST:     TACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCA
genomic: TACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCA
EST: gi|125032363|gb|EL104632.1|EL104632
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGNGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACA
EST: gi|125194621|gb|EL209575.1|EL209575
EST:     GAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124899885|gb|EH974503.1|EH974503
EST:     TGACTTTGGTGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125074339|gb|EL138314.1|EL138314
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAAACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|124788203|gb|EH877882.1|EH877882
EST:     TGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125060178|gb|EL128855.1|EL128855
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTC
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTC
EST: gi|124957951|gb|EL032733.1|EL032733
EST:     GTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051160|gb|DR346915.1|DR346915
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124746070|gb|EH836570.1|EH836570
EST:     TTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051158|gb|DR346913.1|DR346913
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125214713|gb|EL229029.1|EL229029
EST:     TGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACA
genomic: TGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACA
EST: gi|124901653|gb|EH975733.1|EH975733
EST:     GGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125302493|gb|EL316578.1|EL316578
EST:     TAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         G-TTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125095154|gb|EL152393.1|EL152393
EST:     AGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: AGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86078472|gb|DR374229.1|DR374229
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051163|gb|DR346918.1|DR346918
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|47829213|gb|CK118897.1|CK118897
EST:     TTTACTCTATCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124772078|gb|EH862207.1|EH862207
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTA-TTTACACAAATGATGGCGGAGAGA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaataatgatttacaaaatgatcttctcttatctggaaatggatccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTGCTCCAACTTCTTGT
                                            tccttttgc  CT-rich tract
     aatgatttacaaaat  TA-rich tract