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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgacattgatgatgatgatgatgatacacgcttcattcttctcaccttaccatccctgcataacccttttttacccgattctttgcagCTGTCAACCCTTGTTGCTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTGGTAACAAAGTAGATCGTGTCCCTC

Basic information

species Arabidopsis thaliana
transcript AT5G65960.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65960.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0031g02260.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------gtttgacattgatgatgatgatgatgatacacgcttcattcttctcaccttaccatccctgcataacccttttttacccgattctttgcagCTGTCAACCCTTGTTGCTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTGGTAACAAAGTAGATCGTGTCCCTC
                                | ||| |      || |   |  ||  |   ||    || |  |     |        | |     | | || ||      |   ||||||||||| |  ||||||| |||||||| ||||||||||| ||||| ||  | | |||||| ||||| || ||  |||| |||||||| |||| ||| ||  
gttagccctatcctattgctttctgaattctttgtgaaagcttcaattagttttgtgggaactgccagtttataatttttgtgtggctgatacgctgtcttcttgtatggctctgcctgcagCTGTCATCTTTTGTTGCACTTCAAGATTGGGTTTCTCACACTGATATTCAAAATTTTGACATATTATTATGTGTTGGGAACAAAGTGGATCTTGTTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcttctcaccttaccatccctgcataacccttttttacccgattctttgcagCTGTCAACCCTTGTTGCTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTGGTAACAAAGTAGATCGTGTCCCTC
                              cccttttttacccgat  CT-rich tract
                                 tttttta  TA-rich tract