1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattcccattgattgatgaacatgatagagctctctctttatagctaagtctctttaacttttgcgtttgcttgtgtttctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGACGATTAATGCGATAATCTGGGGAGTAGTTGGGACTTTCTGGTGGAAATT
species | Arabidopsis thaliana |
transcript | AT5G64290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCTTTGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAG CGGGTTATGTTGATCTGCCTGATGTATTCAAGAEST: gi|125257354|gb|EL271439.1|EL271439
genomic: TGGTGCTTTGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAGgtattcccat ... ctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGA
EST: CGGTCAAGCCGCTGTCTACTATGGAG CGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGA
genomic: CGGTCAAGCCGCTGTCTACTATGGAGgtattcccat ... ctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGA
ctctttatagctaagtctctttaacttttgcgtttgcttgtgtttctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGACGATTAATGCGATAATCTGGGGAGTAGTTGGGACTTTCTGGTGGAAATT
ctttaac putative branch site (score: 3)
cttgtgtttcttttt putative PPT
tttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcccattgattgatgaacatgatagagctctctctttatagctaagtctctttaacttttgcgtttgcttgtgtttctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGACGATTAATGCGATAATCTGGGGAGTAGTTGGGACTTTCTGGTGGAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA