1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtgaagtaactggtctaataagagattttggggtttcattcttggtttttctgagatgtgtttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
species | Arabidopsis thaliana |
transcript | AT5G64130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTGTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|152038486|gb|AV824182.2|AV824182
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|124750706|gb|EH840836.1|EH840836
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: TCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|47828491|gb|CK118175.1|CK118175
genomic: TCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: CACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|152034695|gb|BP834900.2|BP834900
genomic: CACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATT-CCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|164004020|gb|ES013701.1|ES013701
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: GGCTCATGCCAGAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAEST: gi|86059149|gb|DR354906.1|DR354906
genomic: GGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAA
EST: AGAAGAAGTATGGATGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|124973294|gb|EL046936.1|EL046936
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTEST: gi|124977070|gb|EL050440.1|EL050440
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACT
EST: GAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAAG GATCATGAGCGAGCATACTTTEST: gi|86059148|gb|DR354905.1|DR354905
genomic: GAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAA-Ggtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTT
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GRTCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|164047227|gb|ES144642.1|ES144642
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGEST: gi|125297372|gb|EL311457.1|EL311457
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGEST: gi|164124322|gb|EL999452.1|EL999452
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTG
EST: GAAGAAGTATGGAGGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACEST: gi|86075858|gb|DR371615.1|DR371615
genomic: GAAGAAGTATGGA-GGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATAC
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|86059150|gb|DR354907.1|DR354907
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|163968699|gb|ES193949.1|ES193949
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAAGCGAGCATACTTTGACTCAGCTG
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGA-GCGAGCATACTTTGACTCAGCTG
aataagagattttggggtttcattcttggtttttctgagatgtgtttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
gtctaat putative branch site (score: 3)
tgtttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaagtaactggtctaataagagattttggggtttcattcttggtttttctgagatgtgtttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT