1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aattttatcatccttaatgattgagatatataaacactttacttttgcttcatcttggacatactttttttctgataatgagtttatctatggtgaacagGCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTATATGCTGTCCAG
species | Arabidopsis thaliana |
transcript | AT5G63640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTAGCTGCTCGAGATGAAAG GCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAAEST: gi|86072053|gb|DR367810.1|DR367810
genomic: ATTAGCTGCTCGAGATGAAAGgtatgcagag ... tggtgaacagGCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAA
EST: GACTGGGCCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAG GCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAA
genomic: GACTGGGCCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAGgtatgcagag ... tggtgaacagGCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAA
tgcttcatcttggacatactttttttctgataatgagtttatctatggtgaacagGCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTATATGCTGTCCAG
ttctgat putative branch site (score: 3)
tttttttctgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttatcatccttaatgattgagatatataaacactttacttttgcttcatcttggacatactttttttctgataatgagtttatctatggtgaacagGCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTATATGCTGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - -aaacact