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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaaacattgttgcaaatctagtttcttctgtgtgattttgaattaatcacatcaaccttaagagttttgcttgattgtgaatcttgacctcttggtactgtcagattgagagttactcttttcggttaacagATTTGATCACTATCCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTATAATT

Basic information

species Arabidopsis thaliana
transcript AT5G63630.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63630.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G06240.1 (Glycine max), 3'ss of exon 1
gtaaacaaacattgttgcaaatctagtttcttctgtgtgattttgaattaatcacatcaaccttaagagttttgcttgattgtgaatcttgacctcttggtactgtcagattgagagttactcttttcggt-taacagATTTGATCACTATCCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTATAATT
                                 | | ||| | |||||  ||    | || | ||  |    ||||| | | ||  |  ||      | ||| | | |   |  || ||      |  | |    ||||||||| || | | || | || ||  | ||  |||| | | |||||||||||||||| |||| |||||| ||||||||||| |||||||| ||  |||||
---------------------------------tatatgactctgaatatatt---tgaatcgtattatccatgctttagtatg--ttatgctgctattgtattatgaatgtctgatttttgagatgtgttgccgcagATTTGACCAATGTTCAATCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACGGTTGTTCAGGAGGCTACTCTTCCAGTAATT

upper sequence: AT5G63630.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G02880.1 (Glycine max), 3'ss of exon 1
gtaaacaaacattgttgcaaatctagtttcttctgtgtgattttgaattaatcacatcaaccttaagagttttgcttgattgtgaatcttgacctcttggtactgtcagattgagagttactcttttcggt-taacagATTTGATCACTATCCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTATAATT
                                    |||| |||||  ||   || | ||  |||  |    || || | | ||  |  ||      | ||| | |     |  || ||  |   |  | |   |||||||||| || | | || | |||||  | ||  |||| | | |||||||||||||||| |||| |||||| ||||| ||||| |||||||| ||  |||||
----------------------------------acgtgactttgacata--tacttgaatattattatccatggtttagtatg--ttatgttgctgttgtattatggatgtctgattttttagatgtgatgccacagATTTGACCAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatcttgacctcttggtactgtcagattgagagttactcttttcggttaacagATTTGATCACTATCCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTATAATT
    tcttgac  putative branch site (score: 3)
                                   ttactcttttc  putative PPT