Sequence
atgc intronic sequence ATGC exonic sequencegttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgcctgttgaacagagtagagttttgttatattggtcgcgtttttcaaagatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G61510.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G61510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA12G36990.1 (Glycine max), 3'ss of exon 3
gttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgcctgttgaacagagtagagttttgttatattggtcgcgtttttcaaagatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
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--------------------------------------------------gtgaattcatgctttatc-----ctgaaaccaatgcattttctcataatttgtccc-tagcttgacaattaacagact-catcactcatgtacatatcatttt---acagGTTGAACCCGGTCATACAATTCTTGTCCATGCAGCAGCTGGCGGAGTTGGATCCCTATTGTGTCAGTGGGCAAATGCTCTTGGTGCAACTGTTATAGGAA
upper sequence: AT5G61510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv09s0002g08480.t01 (Vitis vinifera), 3'ss of exon 3
gttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgcctgttgaacagagtagagttttgttatattggtcgcgtttttcaaagatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
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------------------------------------------------------ctccacatttgcat---tactgaaataattagaagatagcattatttgcatcatagattcactctttaatcattctaaggatctaaatttcttgccatttc---agGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAATTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
upper sequence: AT5G61510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv09s0002g08470.t01 (Vitis vinifera), 3'ss of exon 3
gttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgc-ctgttgaacagagtagagttttgttatattggtcgcgtttttcaa--agatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
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---------------------------------------------------------tctccacatttgcattactgaaataattagaatatagc---attatttgcatcatagaatcacacctagtcattctaaggatctaaattgcttgccatttc---agGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
upper sequence: AT5G61510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S47_62V6.1 (Physcomitrella patens), 3'ss of exon 4
gttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgcctgttgaacagagtagagttttgttatattggtcgcgtttttcaaagatctattcact-atatgactcaagtcctatttg-tatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
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--------------------------------------------------------ttgtatttctgtggttgatctgcatggt----tttcggggtttcg--tgaagtttgaaatcgtctgtctattgactcgtggtggattttgcggactgattggtcagGTTGAAAGCGGGCACACAATCGTTGTTCATGCAGCCGCTGGTGGAGTTGGATCACTCATGGTGCAGTGGGCCAGCAGCATAGGTGCAACTGTGATTGCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116455505|gb|EG498097.1|EG498097EST: TCATGCTCAAGGGTATGACTGCACAGTTTCTCCTTCGCCGTTGCTTCAAG GTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGG
genomic: TCATGCTCAAGGGTATGACTGCACAGTTTCTCCTTCGCCGTTGCTTCAAGgttagttttc ... atttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtttttcaaagatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
tatttgtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgcctgttgaacagagtagagttttgttatattggtcgcgtttttcaaagatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAA
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