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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttctctgtaaatctttgttatgcattgatttagtgatcttgttctttgggcttttgcttactatgtttgtgtttaatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTTTTCACCAGAGAGACTGCTCCGGAAATTTTTGA

Basic information

species Arabidopsis thaliana
transcript AT5G60640.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064529|gb|DR360286.1|DR360286
EST:     GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG                         ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: gi|86064531|gb|DR360288.1|DR360288
EST:     GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG                         ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: gi|124714276|gb|EH805678.1|EH805678
EST:     CTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG                         ATGGAGAATTTGT
genomic: CTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGT
EST: gi|86054030|gb|DR349787.1|DR349787
EST:     GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG                         ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: gi|86064530|gb|DR360287.1|DR360287
EST:     GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG                         ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: gi|164105081|gb|ES057670.1|ES057670
EST:     CTGTCTTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG                         ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
genomic: CTG-C-TCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtgatcttgttctttgggcttttgcttactatgtttgtgtttaatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTTTTCACCAGAGAGACTGCTCCGGAAATTTTTGA
                                     tttgtgtttaatat  TA-rich tract