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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtttccaagataaatctaagacattaccttgcaaagagtgttatctgttttattctttcaccaaaaaatttaacttctttttgaaattttcttgtgcagGAACTTGTCGACCGGATCTTGACCCTTCTTTCTGATGAACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G60410.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462446|gb|EG505038.1|EG505038
EST:     TCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAG                         GAACTTGTCGACCGGATCTTGACCCTTCTTTCTGATGAACAAG
genomic: TCAAGGATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGgttagtatcg ... tcttgtgcagGAACTTGTCGACCGGATCTTGACCCTTCTTTCTGATGAACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttattctttcaccaaaaaatttaacttctttttgaaattttcttgtgcagGAACTTGTCGACCGGATCTTGACCCTTCTTTCTGATGAACAAG
                       atttaac  putative branch site (score: 3)
                                          ttttcttgt  putative PPT
                  aaaaaatttaacttct  TA-rich tract