1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaacagacaaaaatcttccggcacaagtatattttaggtcttttattgttcagttgattcaaccatttgagatatgaaaaatgttgatctttggttcagAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGATAGAGCAGTGTTGGTCGGTTGCACCAGATAAGAGACCCGAGTTCTGGC
species | Arabidopsis thaliana |
transcript | AT5G58950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCAAGCTGCTTTCGCAGTCGTACATAAG AACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGEST: gi|125237072|gb|EL251157.1|EL251157
genomic: ATTCAAGCTGCTTTCGCAGTCGTACATAAGgtaaaatatt ... tttggttcagAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTG
EST: CTGCTTTCGCAGTCGTACATAAG AACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGEST: gi|125023960|gb|EL096229.1|EL096229
genomic: CTGCTTTCGCAGTCGTACATAAGgtaaaatatt ... tttggttcagAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTG
EST: CCTATTCAAGCTGCTTTCGCAGTCGTACATAAG AACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGA
genomic: CCTATTCAAGCTGCTTTCGCAGTCGTACATAAGgtaaaatatt ... tttggttcagAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGA
attgttcagttgattcaaccatttgagatatgaaaaatgttgatctttggttcagAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGATAGAGCAGTGTTGGTCGGTTGCACCAGATAAGAGACCCGAGTTCTGGC
tgttgat putative branch site (score: 4)
tcttt CT-rich tract
atatgaaaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaacagacaaaaatcttccggcacaagtatattttaggtcttttattgttcagttgattcaaccatttgagatatgaaaaatgttgatctttggttcagAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGATAGAGCAGTGTTGGTCGGTTGCACCAGATAAGAGACCCGAGTTCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-taacaga
- - - - caaaaat
- - - - - - - - - - - -acaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat