1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagacgctgacataatctatgagattaatatcctagggtctgcatctgtctttttggttttagattctcgagtggctaactgatagtgttgcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAGTAGGGAAAGAGAGCACCCAGGGCGACGAGGCTGCTGGTTTAATAGAGAA
species | Arabidopsis thaliana |
transcript | AT5G58590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGAGCTTTTCTGCATTCGATTTGCTTCCATTGAGA ATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAGEST: gi|164092408|gb|ES136137.1|ES136137
genomic: GATGAGCTTTTCTGCATTCGATTTGCTTCCATTGAGAgtaagtttat ... gcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAG
EST: GCTTCCATTGAGA ATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCGAGEST: gi|116477948|gb|EG520540.1|EG520540
genomic: GCTTCCATTGAGAgtaagtttat ... gcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAG
EST: CGGCGAGTTGAAAGATGAGCTTTTTTGCATTCGATTTGCTTCCATTGAGA ATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAGEST: gi|116472788|gb|EG515380.1|EG515380
genomic: CGGCGAGTTGAAAGATGAGCTTTTCTGCATTCGATTTGCTTCCATTGAGAgtaagtttat ... gcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAG
EST: CGGCGAGTTGAAAGATGAGCTTTTCTGCATTCGATTTGCTTCCATTGAGA ATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAG
genomic: CGGCGAGTTGAAAGATGAGCTTTTCTGCATTCGATTTGCTTCCATTGAGAgtaagtttat ... gcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAG
ctgtctttttggttttagattctcgagtggctaactgatagtgttgcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAGTAGGGAAAGAGAGCACCCAGGGCGACGAGGCTGCTGGTTTAATAGAGAA
ttttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagacgctgacataatctatgagattaatatcctagggtctgcatctgtctttttggttttagattctcgagtggctaactgatagtgttgcatcaacagATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCTGAAAGCCAGCAAGTAGGGAAAGAGAGCACCCAGGGCGACGAGGCTGCTGGTTTAATAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - gacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttta