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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgctagttttcgtttgttattctccaaaatctttagtctgttgtttttgatagactgcaagtttaacgcgttctactttcagATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGTGAACTTCTTCATGTGAAAATACCTCCAGGAA

Basic information

species Arabidopsis thaliana
transcript AT5G54900.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054573|gb|DR350330.1|DR350330
EST:     AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACA                         ATTTTTGTTGGTGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
genomic: AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAgtatgtcgct ... ctactttcagATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
EST: gi|116479564|gb|EG522156.1|EG522156
EST:     AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACA                         ATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
genomic: AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAgtatgtcgct ... ctactttcagATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
EST: gi|86083467|gb|DR379226.1|DR379226
EST:     AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCYTAATAACMCAACA                         ATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
genomic: AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAgtatgtcgct ... ctactttcagATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
EST: gi|116479553|gb|EG522145.1|EG522145
EST:     AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACA                         ATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
genomic: AAAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAgtatgtcgct ... ctactttcagATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCA
EST: gi|125217942|gb|EL232025.1|EL232025
EST:     AAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACTA                         ATTTTTGTTGGAGGTCTGGA
genomic: AAACACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAAC-Agtatgtcgct ... ctactttcagATTTTTGTTGGAGGTCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctttagtctgttgtttttgatagactgcaagtttaacgcgttctactttcagATTTTTGTTGGAGGTCTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGTGAACTTCTTCATGTGAAAATACCTCCAGGAA
                                 gtttaac  putative branch site (score: 3)
                                           ttctactttc  putative PPT
                tttttgata  TA-rich tract