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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaactacctggttatacataccatattaatctgcttgtcactaaatgaactgttaatgcaatgttgagctattcggtatctttgtagaacatttattgagttgatggtttagacttcactaaatgatgagccttggtaaagatttgagatgcactaaaatggtacttttgatacagGCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGG

Basic information

species Arabidopsis thaliana
transcript AT5G54590.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G36140.1 (Glycine max), 3'ss of exon 4
gtaagtaactacctggttatacataccatattaatctgcttgtcactaaatgaactgttaatgcaatgttgagctattcggtatctttgtagaacatttattgagttgatggtttagacttcactaaatgatgagccttg---gtaaagatttgagatgcactaaaatggtacttttg-atacagGCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGG
                                                                                   |  ||| | |  || |    |     || | |  | ||   |   ||||   |||||   ||  |  ||  | ||||| ||| |   |   | |  || |||| ||| |  ||| | | ||  ||||||||||||| ||  |||| ||||||||||| ||| | ||  ||||||||||||||||||||
----------------------------------------------------------------------------------gtacttg-aaactatgtgcctatcaattgttgtgcatttttttgggtgatt--ccttgcaagttcaacttccatatgcaataataacctgtctctatattcagGTGAAGAGAATGGAGCTCTTGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgatgagccttggtaaagatttgagatgcactaaaatggtacttttgatacagGCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGG
                                         tactttt  CT-rich tract
               taaagattt  TA-rich tract