1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgtatgaataagattctggatattgtgattcaatctaagtttgtggttagtttatttgctcatcaagctctaccactatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTCGCTGTTCATAAACTTTGGAGGGACCACTAGTAAGATCTGTTTCGACTTT
species | Arabidopsis thaliana |
transcript | AT5G53310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAG GGGGTATCAAGACCAAATTTGTGTGGEST: gi|116468126|gb|EG510718.1|EG510718
genomic: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAGgtttgtatga ... tatttttcagGGGGTATCAAGACCAAATTTGTGTGG
EST: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAG GGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTCEST: gi|124723404|gb|EH814806.1|EH814806
genomic: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAGgtttgtatga ... tatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTC
EST: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAG GGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTEST: gi|125146768|gb|EL181325.1|EL181325
genomic: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAGgtttgtatga ... tatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTT
EST: GTTTCTTTTTGAGGAATCTGAAG GGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTCEST: gi|116477869|gb|EG520461.1|EG520461
genomic: GTTTC-TTTTGAGGAATCTGAAGgtttgtatga ... tatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTC
EST: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAG GGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTCEST: gi|86077160|gb|DR372917.1|DR372917
genomic: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAGgtttgtatga ... tatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTC
EST: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAG GGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTC
genomic: CAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAGgtttgtatga ... tatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTC
aatctaagtttgtggttagtttatttgctcatcaagctctaccactatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTCGCTGTTCATAAACTTTGGAGGGACCACTAGTAAGATCTGTTTCGACTTT
ctatttttc CT-rich tract
ttagtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatgaataagattctggatattgtgattcaatctaagtttgtggttagtttatttgctcatcaagctctaccactatttttcagGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTACATCTCAACTTTCCTCGCTGTTCATAAACTTTGGAGGGACCACTAGTAAGATCTGTTTCGACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG