1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagactttgttttcttttcttgtcaagaagctaccctattttcttagatccgatctcttattttggatcttgttcttaattggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
species | Arabidopsis thaliana |
transcript | AT5G53120.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGEST: gi|86043712|gb|DR339467.1|DR339467
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGEST: gi|47831735|gb|CK121419.1|CK121419
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: TTTCGGAACCTCACCCTCGCTCTG GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGEST: gi|86043704|gb|DR339459.1|DR339459
genomic: TTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGEST: gi|125233004|gb|EL247089.1|EL247089
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
EST: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTG GGAAAAAAGGCGGCAAAG
genomic: TCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagacttt ... ttggatgcagGGAAAAAAGGCGGCAAAG
cctattttcttagatccgatctcttattttggatcttgttcttaattggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
tcttaat putative branch site (score: 3)
tcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagactttgttttcttttcttgtcaagaagctaccctattttcttagatccgatctcttattttggatcttgttcttaattggatgcagGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG