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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttacctcttgataggcttgttgttgttgctttccattatcttactaccttacgttttttgtctttgaatgagcgcctacttggtttagatgctgaatctgtatgttaaagtttgtgagttgtagtttttcagagtgcttgctcatgtgactgatgcaactggtttatgtttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG

Basic information

species Arabidopsis thaliana
transcript AT5G53120.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043708|gb|DR339463.1|DR339463
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
EST: gi|86043711|gb|DR339466.1|DR339466
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
EST: gi|86043709|gb|DR339464.1|DR339464
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
EST: gi|86043705|gb|DR339460.1|DR339460
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
EST: gi|86043706|gb|DR339461.1|DR339461
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAAGTTCTGTTCAAAGACAAGTCG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAA-GTTCTGTTCAAAGACAAGTCG
EST: gi|47831735|gb|CK121419.1|CK121419
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
EST: gi|86043707|gb|DR339462.1|DR339462
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATNTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
EST: gi|86043704|gb|DR339459.1|DR339459
EST:     GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAG                         GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG
genomic: GGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGgtaggttacc ... ttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcagagtgcttgctcatgtgactgatgcaactggtttatgtttaattgtagGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG
                                      tttatgtttaattgta  TA-rich tract