Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcattttttctcattattctggtttttcttttccggtttactgctaacaaattaagaatattcatagccggttattggtttgtggcagTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCTATAACAAACGCGGTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGA

Basic information

species Arabidopsis thaliana
transcript AT5G52570.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125105398|gb|EL159174.1|EL159174
EST:     GATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAG                         TCACATCACAAA
genomic: GATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGgtatttcatt ... tttgtggcagTCACATCACAAA
EST: gi|86073437|gb|DR369194.1|DR369194
EST:     GATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAG                         TCACATCACAAACCAAGAGCAGGAGCGTTTGAGTTAAACGATGTGATTGCT
genomic: GATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGgtatttcatt ... tttgtggcagTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtttactgctaacaaattaagaatattcatagccggttattggtttgtggcagTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCTATAACAAACGCGGTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGA
        tgctaac  putative branch site (score: 1)
           taacaaattaagaata  TA-rich tract