1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattaactctcaaatagtttgtttgtcttagtttcatattttatggatctcatcaactaaaacttgcttattatcgcagGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGGAGGAATGTCTCCAAAGGCGTCAAGTATGTGTTCC
species | Arabidopsis thaliana |
transcript | AT5G51880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGGAGAAACCGTTTTT-ATGGTTCAAGGAACAGTATTGTAGCTGAG GTAGCTCCAGTGGAAGGTATGGEST: gi|86077626|gb|DR373383.1|DR373383
genomic: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGgtaattaact ... attatcgcagGTAGCTCCAGTGGAAGGTATGG
EST: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAG GTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGCEST: gi|19741282|gb|AU226635.1|AU226635
genomic: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGgtaattaact ... attatcgcagGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGC
EST: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATT-TAGCTGA- GTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGCEST: gi|116468987|gb|EG511579.1|EG511579
genomic: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGgtaattaact ... attatcgcagGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGC
EST: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAG GTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGC
genomic: TAGGTGGAGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGgtaattaact ... attatcgcagGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGC
gtcttagtttcatattttatggatctcatcaactaaaacttgcttattatcgcagGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGGAGGAATGTCTCCAAAGGCGTCAAGTATGTGTTCC
aactaaa putative branch site (score: 2)
agtttcatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaactctcaaatagtttgtttgtcttagtttcatattttatggatctcatcaactaaaacttgcttattatcgcagGTAGCTCCAGTGGAAGGTATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGGAGGAATGTCTCCAAAGGCGTCAAGTATGTGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA