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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcttatctgttctggctctctagcactttgtttctcctattttgcatgaatgctttgaaaaagttgattcccacttctttagGTATTTGTCCATCCAAAAAGTGGTAAAGGAAATGGCTCCAAGGTCTGGGAAACTGTTTCCAAGATTTTCATTCGCGCTAAAGTTAATACAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G51290.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788358|gb|EH878037.1|EH878037
EST:     TAGAAAGACCAAGAAATCTTTTTG                         GTATTTGTCCATCC-AAAAGTGGTAAAGGAAATGGCTCCAAGGTCTGGGA
genomic: TAGAAAGACCAAGAAATC-TTTTGgtaaaatctt ... acttctttagGTATTTGTCCATCCAAAAAGTGGTAAAGGAAATGGCTCCAAGGTCTGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttctcctattttgcatgaatgctttgaaaaagttgattcccacttctttagGTATTTGTCCATCCAAAAAGTGGTAAAGGAAATGGCTCCAAGGTCTGGGAAACTGTTTCCAAGATTTTCATTCGCGCTAAAGTTAATACAAAG
                                  agttgat  putative branch site (score: 5)
                                        ttcccacttcttt  CT-rich tract
                          tttgaaaaa  TA-rich tract