Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtaatcatctgaaaaattccatatgtgaatgatatctctgttccattttagctttaagatatcaataaaataaactgctgtgtatttacacacctcctttcttctatgcattgactttagGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGTAAAGCTTTTAGATTCTTTAGACGCCATCAAGCGTGAGAATACACTTGGA

Basic information

species Arabidopsis thaliana
transcript AT5G48830.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877189|gb|AU238020.1|AU238020
EST:     ACGATCGTGGAGGAGATACCAGAAGTTGGAACTTCAAAATCTTCTGG--G                         --AGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGT
genomic: ACGATCGTGGAGGAGATACCAGAAGTTGGAACTTCAAAATCTTCTGGTAGgtaagagtaa ... ttgactttagGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaataaactgctgtgtatttacacacctcctttcttctatgcattgactttagGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGTAAAGCTTTTAGATTCTTTAGACGCCATCAAGCGTGAGAATACACTTGGA
                                           cattgac  putative branch site (score: 3)
               tgtattta  TA-rich tract