1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttttggatttgacaagtgtgatcttgtcaacaaatttgtaagatacttagggttcttgattggattcagagataataaagagtttcttttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG
species | Arabidopsis thaliana |
transcript | AT5G48580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGEST: gi|86081492|gb|DR377249.1|DR377249
genomic: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG
EST: GAGATGTGTCGGAATTGCATATCGGTGTCAAG TTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGEST: gi|164179827|gb|ES123831.1|ES123831
genomic: GAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG
EST: G-TTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAACAEST: gi|164131206|gb|ES094256.1|ES094256
genomic: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACA
EST: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAACAEST: gi|164215864|gb|ES123615.1|ES123615
genomic: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACA
EST: TTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAAG TTTAAGCCAAAAACAEST: gi|116469680|gb|EG512272.1|EG512272
genomic: TTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAA-Ggtaattttta ... ttttttgcagTTTAAGCCAAAAACA
EST: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGEST: gi|124754381|gb|EH844511.1|EH844511
genomic: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG
EST: AAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGEST: gi|86084981|gb|DR380740.1|DR380740
genomic: AAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG
EST: GTTTTGCCAAGAAGMCCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGEST: gi|164147710|gb|ES184862.1|ES184862
genomic: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG
EST: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG TTTAAGCCAAAAAC
genomic: GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGgtaattttta ... ttttttgcagTTTAAGCCAAAAAC
tacttagggttcttgattggattcagagataataaagagtttcttttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG
tcttgat putative branch site (score: 4)
tttcttttttttgc putative PPT
ataataaagagtttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttggatttgacaagtgtgatcttgtcaacaaatttgtaagatacttagggttcttgattggattcagagataataaagagtttcttttttttgcagTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG
- - - -gatttga
- - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - -aagatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaga