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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttctttttttgtttattctatgttggagtctcattcttcaatccacactagcttgttgactcactacatgtttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTGAAACTTCTATTACTTGGTCTTTTTCTCCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G47900.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435426|gb|EG478018.1|EG478018
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435445|gb|EG478037.1|EG478037
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435443|gb|EG478035.1|EG478035
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435425|gb|EG478017.1|EG478017
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAG                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
EST: gi|116435432|gb|EG478024.1|EG478024
EST:     TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAA                         AACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG
genomic: TGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGgtaacttctt ... ttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctcattcttcaatccacactagcttgttgactcactacatgtttgtttatagAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTGAAACTTCTATTACTTGGTCTTTTTCTCCAAG
                               gactcac  putative branch site (score: 2)
                                            tttgttt  putative PPT
                                            tttgtttata  TA-rich tract