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...tttcccgttcgattactcttggtatgagtagacgatttagattgagttcattttacaattgcatttcgttgtctgagagtgtttagttggttattaccagAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
species | Arabidopsis thaliana |
transcript | AT5G45170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTATTCAGACTTGTTGAG AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGEST: gi|125092730|gb|EL150553.1|EL150553
genomic: TTTATTCAGACTTGTTGAGgtatatatat ... ttattaccagAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
EST: GGCTAGTATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAG AAAAGGTGCTGCTGATGAAGAGAAAAEST: gi|116478591|gb|EG521183.1|EG521183
genomic: GGCTAG-ATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAGgtatatatat ... ttattaccagAAAAGGTGCTGCTGATGAAGAGAAAA
EST: GGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAG AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGEST: gi|125068027|gb|EL134319.1|EL134319
genomic: GGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAGgtatatatat ... ttattaccagAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
EST: GGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAG AAAAGGTGCTGCTGATGAAEST: gi|116478590|gb|EG521182.1|EG521182
genomic: GGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAGgtatatatat ... ttattaccagAAAAGGTGCTGCTGATGAA
EST: GGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAG AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
genomic: GGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAGgtatatatat ... ttattaccagAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
gttcattttacaattgcatttcgttgtctgagagtgtttagttggttattaccagAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
ttttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcccgttcgattactcttggtatgagtagacgatttagattgagttcattttacaattgcatttcgttgtctgagagtgtttagttggttattaccagAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - -gatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttag