1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtttttttcatcttctttagttcacaaccacttttttttcttacattcaaagtctaacgctttggttgtgtttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAATACCAATGAAGAACACAAAACAGTGGTTTGTTACTTCAAATCCAGAAAG
species | Arabidopsis thaliana |
transcript | AT5G42050.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCACCACTACGACGGTCCTAAGTTCCGACNCGAACTCAGTGTCCCTGAG GTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAAEST: gi|116414001|gb|EG456593.1|EG456593
genomic: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAGgtacgttttt ... tttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAA
EST: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAG GTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAAEST: gi|116481291|gb|EG523883.1|EG523883
genomic: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAGgtacgttttt ... tttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAA
EST: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAG GTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAAEST: gi|125000542|gb|EL072811.1|EL072811
genomic: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAGgtacgttttt ... tttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAA
EST: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAG GTGCTTTCTCTATTGGACATTTTTGCTGACCAAAAEST: gi|125266934|gb|EL281019.1|EL281019
genomic: TGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAGgtacgttttt ... tttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAA
EST: GGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAG GTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAA
genomic: GGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAGgtacgttttt ... tttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAA
aaccacttttttttcttacattcaaagtctaacgctttggttgtgtttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAATACCAATGAAGAACACAAAACAGTGGTTTGTTACTTCAAATCCAGAAAG
gtctaac putative branch site (score: 2)
tgttttt putative PPT
ttttttttcttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttttttcatcttctttagttcacaaccacttttttttcttacattcaaagtctaacgctttggttgtgtttttggcagGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGGGTAATACCAATGAAGAACACAAAACAGTGGTTTGTTACTTCAAATCCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC