1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattcaatattggaacaactcttagattaccacgaactttaggtttagtagagttccttgaaattcttggacctaattaaaacttgtatttgcccccaaatcaaatcaatttcttggcttaatcttgacacttttattggttgttttgtttttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTT
species | Arabidopsis thaliana |
transcript | AT5G41700.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|125067045|gb|EL133693.1|EL133693
genomic: TCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|125029701|gb|EL101970.1|EL101970
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|124990288|gb|EL062557.1|EL062557
genomic: TCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGEST: gi|86027897|gb|DR323650.1|DR323650
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACG
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCTTTCAAGCCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|124978993|gb|EL052099.1|EL052099
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGEST: gi|124734987|gb|EH826389.1|EH826389
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAG
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAAEST: gi|125054731|gb|EL125279.1|EL125279
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAA
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|86027888|gb|DR323641.1|DR323641
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCTTTCAAGCCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|86027910|gb|DR323663.1|DR323663
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGANTATCCTTTCAAGCCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCEST: gi|125259365|gb|EL273450.1|EL273450
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGAEST: gi|125033004|gb|EL105273.1|EL105273
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGA
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAEST: gi|163996451|gb|ES127935.1|ES127935
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCA
EST: CTATCCATTCAAACCACCAAAG GTTGCATTTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGEST: gi|125266157|gb|EL280242.1|EL280242
genomic: CTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCA-TTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAG
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTT-CACCCTAATEST: gi|86027892|gb|DR323645.1|DR323645
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCTTTCAAGCCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|124897032|gb|EH973246.1|EH973246
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAG-TGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|124854724|gb|EH939161.1|EH939161
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCTTCCGGACTATCCATTCAAACCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCAEST: gi|86027906|gb|DR323659.1|DR323659
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCA
EST: TTCTCGTTACCATTCACTTSCCTCCGGACTATCCTTTCAAGCCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCEST: gi|86027893|gb|DR323646.1|DR323646
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
EST: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCTTTCAAGCCACCAAAG GTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
genomic: TTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGgtattcaata ... ttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGC
caatttcttggcttaatcttgacacttttattggttgttttgtttttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTT
tcttgac putative branch site (score: 3)
ttttgtttttattt putative PPT
ttgttttgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcaatattggaacaactcttagattaccacgaactttaggtttagtagagttccttgaaattcttggacctaattaaaacttgtatttgcccccaaatcaaatcaatttcttggcttaatcttgacacttttattggttgttttgtttttatttgcagGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC