1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattgttcatgttatctacctcgatgcaaagcggttttcttatgttcctcataaatgctaatacttgcttgcacatgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTACACTG
species | Arabidopsis thaliana |
transcript | AT5G41600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTG GTAATTGCTGGCTTGEST: gi|164100363|gb|ES203212.1|ES203212
genomic: CCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGgtattgttca ... catgttttagGTAATTGCTGGCTTG
EST: CAAGAAATTTATCCTG GTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCEST: gi|164040359|gb|ES134264.1|ES134264
genomic: CAAGAAATTTATCCTGgtattgttca ... catgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTC
EST: GAAATTTATCCTG GTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCEST: gi|86075888|gb|DR371645.1|DR371645
genomic: GAAATTTATCCTGgtattgttca ... catgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTC
EST: CCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTG GTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCEST: gi|124779678|gb|EH869621.1|EH869621
genomic: CCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGgtattgttca ... catgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTC
EST: CCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTG GTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGG
genomic: CCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGgtattgttca ... catgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGG
aagcggttttcttatgttcctcataaatgctaatacttgcttgcacatgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTACACTG
tgctaat putative branch site (score: 2)
ttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttcatgttatctacctcgatgcaaagcggttttcttatgttcctcataaatgctaatacttgcttgcacatgttttagGTAATTGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT