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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcattcaaaccggttcggtaatttaaattagtttggtttggtttatttaataactctgttttctcttccttattatccggttctaaatcaatttcctttttgtttctagCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGACGTTCAATACGGTTACAAAGCGAAAACAACAGCCGGTACGGTTTTCAAT

Basic information

species Arabidopsis thaliana
transcript AT5G40780.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125245264|gb|EL259349.1|EL259349
EST:     TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAG                         CTACTCAACAA
genomic: TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGgtaaatcatt ... ttgtttctagCTACTCAACAA
EST: gi|116442688|gb|EG485280.1|EG485280
EST:     TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAG                         CTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGA
genomic: TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGgtaaatcatt ... ttgtttctagCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGA
EST: gi|124719184|gb|EH810586.1|EH810586
EST:     CTGCTGCCGTTATGTCTCTCAG                         CTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGA
genomic: CTGCTGCCGTTATGTCTCTCAGgtaaatcatt ... ttgtttctagCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGA
EST: gi|125311825|gb|EL325910.1|EL325910
EST:     TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAG                         CTACTCAACAATCGCATGGGCATCA
genomic: TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGgtaaatcatt ... ttgtttctagCTACTCAACAATCGCATGGGCATCA
EST: gi|124976823|gb|EL050211.1|EL050211
EST:     CCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAG                         CTACCCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAA
genomic: CCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGgtaaatcatt ... ttgtttctagCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAA
EST: gi|301501018|gb|HO206558.1|HO206558
EST:     TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAG                         CTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGA
genomic: TTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGgtaaatcatt ... ttgtttctagCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttttctcttccttattatccggttctaaatcaatttcctttttgtttctagCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGACGTTCAATACGGTTACAAAGCGAAAACAACAGCCGGTACGGTTTTCAAT
                          ttctaaa  putative branch site (score: 2)
                                     tttcctttttgtttct  putative PPT
                          ttctaaatcaattt  TA-rich tract