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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatacattaactcgagaacaagaacttatgttgttgattcttttagttgaattgtaaaattgattctgttttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTTAACTCCATTATTAATTGGCTATTGTCTAATAGCTCTTCTTTAGTTGTGG

Basic information

species Arabidopsis thaliana
transcript AT5G40530.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116455373|gb|EG497965.1|EG497965
EST:     GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATG                         TATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
genomic: GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGgtaaacatac ... ttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
EST: gi|86085419|gb|DR381178.1|DR381178
EST:     GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATG                         TATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
genomic: GAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGgtaaacatac ... ttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
EST: gi|116455372|gb|EG497964.1|EG497964
EST:     AATGTTTGATATG                         TATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT
genomic: AATGTTTGATATGgtaaacatac ... ttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttgttgattcttttagttgaattgtaaaattgattctgttttgttattagTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTTAACTCCATTATTAATTGGCTATTGTCTAATAGCTCTTCTTTAGTTGTGG
                                aattgat  putative branch site (score: 4)
                                      ttctgtttt  CT-rich tract
               ttttagttgaattgta  TA-rich tract