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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcactgccttatatctgagcaacttgtttatcttttcaagtgttttgaatttgattttaaattgtcattcatgtgaacatctgtttgtttattgaacattctgtttctacagtgtagttaagttatgttcgtctctctttcagCTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTTGTAAAGTCGAA

Basic information

species Arabidopsis thaliana
transcript AT5G39590.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116452162|gb|EG494754.1|EG494754
EST:     TCATGTTTTCCCGGCAATAGCGGTGAACCAAATGAACATCTTCTATACCG                         CTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGG
genomic: TCATGTTTTCCCGGCAATAGCGGTGAACCAAATGAACATCTTCTATACCGgtatctcact ... tctctttcagCTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGG
EST: gi|125179506|gb|EL197205.1|EL197205
EST:     CATGTTTTCCCGGCAATAGTCGGTGAACCAAATGAACATCTTCTATACCG                         CTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACG
genomic: CATGTTTTCCCGGCAATAG-CGGTGAACCAAATGAACATCTTCTATACCGgtatctcact ... tctctttcagCTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACG
EST: gi|86040730|gb|DR336485.1|DR336485
EST:     CATGTTTTCCCGGCAATAGCGGGTGAACCAAATGAACATCTTCTATAC-G                         CTCATATTATCACGGGGAAAGGCATGAAT
genomic: CATGTTTTCCCGGCAATAGCGG-TGAACCAAATGAACATCTTCTATACCGgtatctcact ... tctctttcagCTCATATTATCACGGG-AAAGGCATGAAT
EST: gi|116452163|gb|EG494755.1|EG494755
EST:     TCATGTTTTCCCGGCAATAGCGGTGAACCAAATGAACATCTTCTATACCG                         CTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGG
genomic: TCATGTTTTCCCGGCAATAGCGGTGAACCAAATGAACATCTTCTATACCGgtatctcact ... tctctttcagCTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgaacattctgtttctacagtgtagttaagttatgttcgtctctctttcagCTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTTGTAAAGTCGAA
                                     tgttcgtctctctttc  CT-rich tract
                             ttaagttat  TA-rich tract