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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactctctgttctgacttgttttaaaataacaatctccattactcagtaagaataaatatcaagaactcactcaaatctattgttacaaacagTGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGCAGAGCCAGTTTGATGCCATGGCATGTGTTCTTAGGGATTTCCATATATG

Basic information

species Arabidopsis thaliana
transcript AT5G38630.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797349|gb|AU229221.1|AU229221
EST:     CTCTTTCTCTTTGCATTCCAG                         TGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
genomic: CTCTTTCTCTTTGCATTCCAGgtacactctc ... ttacaaacagTGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
EST: gi|86087095|gb|DR382854.1|DR382854
EST:     GTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAG                         TGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
genomic: GTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAGgtacactctc ... ttacaaacagTGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
EST: gi|86084767|gb|DR380526.1|DR380526
EST:     TCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTTGCATTCCAG                         TGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
genomic: TCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTC-TTTGCATTCCAGgtacactctc ... ttacaaacagTGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
EST: gi|19877254|gb|AU238085.1|AU238085
EST:     GTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAG                         TGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC
genomic: GTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAGgtacactctc ... ttacaaacagTGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactcagtaagaataaatatcaagaactcactcaaatctattgttacaaacagTGGGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGCAGAGCCAGTTTGATGCCATGGCATGTGTTCTTAGGGATTTCCATATATG
                          aactcac  putative branch site (score: 2)
         taagaataaatatcaa  TA-rich tract