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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatgaagttagtgtggcatttcttagcaatttttgtttgtttttcctctgattattttttgtatttagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA

Basic information

species Arabidopsis thaliana
transcript AT5G37710.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G33660.1 (Glycine max), 3'ss of exon 3
--------------------gtaataatgaagttagtgtggcatttcttagcaat-ttttgtttgtttt-------tcctctgattattttttgtatttagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA
                    || | |         |  |  |   | | || ||| | ||||||    |       | | ||| ||  ||  ||||   |||||||| || |||||||| |||||||| || || |||||||||||||| ||||||||||||||||| || || |  ||||||||||| |||||||  |||         
actgagaaatcatttgcatcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactg-ttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT---------

upper sequence: AT5G37710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G04540.1 (Glycine max), 3'ss of exon 3
--------------gtaataatgaagttagt-----gtggcatttcttagcaattt-ttgtttgtttt-------tcctctgattattttttgtatttagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA
              | | |  | ||  | ||      |  ||| | | || ||| | ||||||    |       | | ||| ||  ||  || |   |||||||| || |||||||| |||||||| || || ||||| |||||||| |||||||||||||| || || || |  |||||||||||||||||||  |||         
ctgagatatcatttgaattgttaaatcttgtcctgaattacatctataagtaatatgttgtttccaataatgaaattcactg-ttgcttggtgaacgcagaTGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCTGTTGATGGAAGATTTGAGCATATTGTCTTGTCCTGTAATGCAACATCGGATCATGGAATTA--------

upper sequence: AT5G37710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0006g01030.t01 (Vitis vinifera), 3'ss of exon 3
-------------------gtaataatgaagttagtgtggcatttcttagca-atttttgtttgtttttcctctgattatttt-----ttgtatt--tagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA
                    | | |    | | |  ||| ||| |  ||  | | || |  ||  | |    |||| | ||||     ||||  |  |||||||||||||| ||| || || || ||||| || ||||| |||||||| || |||||||| || || |||||||  ||||| ||||| |||||||  |||         
cctgcaaaagtcctctattatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctgaaactgaattttttgctgcttgtgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT---------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagcaatttttgtttgtttttcctctgattattttttgtatttagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA
                       ctctgat  putative branch site (score: 4)
                          tgattattttttgtat  TA-rich tract