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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcctcttaaaacttcttcgatatgttttgaacatcccatgttactatttggttaataatctttgatggtatatgttgctgtggtaatattgcagATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCTGCTAACGAAACCGTCTTTAAATGGCATTCCTCTTCTG

Basic information

species Arabidopsis thaliana
transcript AT5G37680.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024175|gb|DR319928.1|DR319928
EST:     AGGTTTCGTACCATGTGGGAGCGTTACTGTCGCGTTGTTTCCGCCATTGT                         ATATGTGATTGATGCTGCAGATCGAGAT
genomic: AGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGTgtacatcctc ... aatattgcagATATGTGATTGATGCTGCAGATCGAGAT
EST: gi|86076485|gb|DR372242.1|DR372242
EST:     AGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGT                         ATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGA
genomic: AGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGTgtacatcctc ... aatattgcagATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGA
EST: gi|86024174|gb|DR319927.1|DR319927
EST:     AGGTTTCGTACCATGTGGGAGCGTTACTGTCGCGGTGTTTCCGCCATTGT                         ATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGA
genomic: AGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGTgtacatcctc ... aatattgcagATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactatttggttaataatctttgatggtatatgttgctgtggtaatattgcagATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCTGCTAACGAAACCGTCTTTAAATGGCATTCCTCTTCTG
     tatttggttaataat  TA-rich tract