1 5' 3' | 2 5' 3' | 3 5' 3' |
...aattatggtggaaccgcaaattacatccatggtcaccattcaaaattataattgcttttggatttgaatagacttttgatgttttgatttcttttttcagGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGATGATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACG
species | Arabidopsis thaliana |
transcript | AT5G35580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ttataattgcttttggatttgaatagacttttgatgttttgatttcttttttcagGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGATGATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACG
ttttgat putative branch site (score: 4)
ttttgatttctttttt CT-rich tract
ttttgatttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattatggtggaaccgcaaattacatccatggtcaccattcaaaattataattgcttttggatttgaatagacttttgatgttttgatttcttttttcagGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGATGATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACG
- - - - - - -ccgcaaa
- - - - - - - - - - - acatcca
- - - - - - - - - - - - - - - -gtcacca
- - - - - - - - - - - - - - - - - - - ttcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg