1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtagttgcctcagaactgtgaatatttcaaggttttgttagttgattttaagacgaaacacaacctgatatatatgaaatgtgttttcttctacatttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTG
species | Arabidopsis thaliana |
transcript | AT5G30510.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTEST: gi|164091835|gb|ES176577.1|ES176577
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTT
EST: TTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAA-TACCTCTTAAGTTTGTGEST: gi|125074130|gb|EL138202.1|EL138202
genomic: TTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: GGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGEST: gi|125212793|gb|EL227747.1|EL227747
genomic: GGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: AAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTAGAAAAAAGAAATACCTCTTAAGTTTGEST: gi|124995016|gb|EL067285.1|EL067285
genomic: AAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTT-GAAAAA-GAAATACCTCTTAAGTTTG
EST: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGEST: gi|125033254|gb|EL105523.1|EL105523
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTEST: gi|47832014|gb|CK121698.1|CK121698
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCT
EST: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGEST: gi|124745335|gb|EH836295.1|EH836295
genomic: CTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: GTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCG AAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGEST: gi|125160163|gb|EL187895.1|EL187895
genomic: GTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTG
EST: TCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATACG AAAGCAGCAGCTGAAGAGCTT
genomic: TCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCAT-CGgttagtagtt ... tttttgtcagAAAGCAGCAGCTGAAGAGCTT
agacgaaacacaacctgatatatatgaaatgtgttttcttctacatttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTG
acctgat putative branch site (score: 4)
ttttcttctacatttt putative PPT
tgatatatatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagttgcctcagaactgtgaatatttcaaggttttgttagttgattttaagacgaaacacaacctgatatatatgaaatgtgttttcttctacatttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG