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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaagctttctccttctattgttcctgaaaataattgctcaaggatgttaaccgtacactgattcttctataatttccatcatagGAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G29000.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085768|gb|DR381527.1|DR381527
EST:     ACTTCACGAGGCATTCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAAC                         GAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAATAACCCTGGCTTGACCA
genomic: ACTTCACGAGGCATTCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACgtgcgtaagc ... tccatcatagGAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAATAACCCTGGCTTGACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattgctcaaggatgttaaccgtacactgattcttctataatttccatcatagGAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAG
                                           tttccatc  CT-rich tract
                               attcttctataattt  TA-rich tract