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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G28060.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 3'ss of exon 2
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                     |||   |  |   | | | | || ||           || |||    |  || |||  |         |  | |  |  ||||||  |    |  ||| ||   |   | ||||||||| || | ||||||| ||||||| ||  | || ||||| ||||||||||||||||| || ||||||||||||||||| ||||||
------------------------------------ttttccatgatgcatatcaatttaactcgtga--aacactatgaaagcccatgttttatg---------tattttgtctttctcattttc---tttttgctgccatacct-acagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 3'ss of exon 2
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                           |  || |  ||  |  |  | |    | |    |  |  | ||| | | |  |  ||  || ||   |     | | |  |   |||| ||  || | |  |  ||||||||| |||| ||| ||| | ||||| ||| | || ||||| |||||  |||||||||| || ||||||||||||||||| ||||||
-------------------------------------------tattattgattgattcatgtgaaa--taggaactgcacatgcaccgatgtatgtggagtcattgacat----gtttgaatcactaatgttt--tgttattctccacagAATGGTCTTGCCACTAAGGTAGAGAAGTCACGTAAGCAGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G091383_T01 (Zea mays), 3'ss of exon 2
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgca-atctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                            || |  ||  | |  |    |   || ||| ||  |    |||||  |           | ||||  |||  || |   ||   | ||  ||||   ||   || ||||| || ||||  |||||| | ||||| ||  | || ||||| |||||||||||||||||||||||||||||||| ||||| ||||||
----------------------------------------caaatccatgttacattgcaatgcagattttgtgattgaaacaacactgtct---------gtattggtcctgcttatttttgacaagagtg--tgtttgggtttctg-cagAACGGTCTTGCTACCAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G171426_T01 (Zea mays), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                             |  |     | |     ||  |  | ||  | | | |||   || ||  |    |    ||||   | || | |  | ||    ||  |  || |    ||| |||||||| ||||  || ||| ||||||| ||  | || || || |||||| ||||||||||||| ||||||||||||||||| ||||||
--------------------------------------------gcatgcccgaaatgatattttattgttgtattgtaagttt---tgattgacatgaacctgatggatgttcactatactgcttttttgtgttctgtt----ttgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAGGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G151252_T03 (Zea mays), 3'ss of exon 2
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                       | | || ||  || |  | |  | |   | || ||    |||  |||||    |||        | ||  | |    ||   | ||  |||  ||||   ||| |||| |||||||| ||||  || ||| ||||||| ||  | || || || || ||| ||||||||||||| ||||||||||||||||| ||||||
---------------------------------------tggtttgtaagttctgat-tgacgtgaacctgatg----gatgctcactatactgccgc----tactgaggctat--tcatctgcttgaatttttgtgtttgt-attgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G029685_T01 (Zea mays), 3'ss of exon 2
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                        ||  |  ||  || ||   |    | ||   ||    || |   | ||| ||      || |||   ||   | |      | || |  |   ||||  | |  | ||||||| || ||||  |||||| | ||||| ||| | || ||||| |||||  | ||||||||||||||||| ||||||||||| ||||||
-------------------------------------gactgtcttgagccttcagatgacgccattcactgtttgctgttagcctctgttt------gatacacctgt-ccgtag----gtgctaatgtt-ctgtt--tttcgtcgacagAACGGCCTTGCTACCAAGGTAGAGAAGTCACGAAAGCAGATGAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G029685_T02 (Zea mays), 3'ss of exon 2
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG----
                                        ||  |  ||  || ||   |    | ||   ||    || |   | ||| ||      || |||   ||   | |      | || |  |   ||||  | |  | ||||||| || ||||  |||||| | ||||| ||| | || ||||| |||||  | ||||||||||||||||| ||||||||||| ||||||    
-------------------------------------gactgtcttgagccttcagatgacgccattcactgtttgctgttagcctctgttt------gatacacctgt-ccgtag----gtgctaatgtt-ctgtt--tttcgtcgacagAACGGCCTTGCTACCAAGGTAGAGAAGTCACGAAAGCAGATGAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGA

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G37190.1 (Glycine max), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG-------------
                           |   ||    || |  | |||  ||||| | ||| ||  |  || |  ||     |    | |||||   ||    ||      |  |||||  || ||                      |||||||||||||| || ||  | |||||||||||||| || || |||||||| ||||| || || |||||||| ||||| |||||||||             
---------------------------tccttatggattatattactacattttattttagtttctttctgttatttctgcct--gtttctttgttttgtgctaacaaaactaaaatcttttattg----------------------cagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGGTAATGCAATTCT

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G30200.1 (Glycine max), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgc-tttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                                    |||    |  | |   ||    | ||| |||| || | ||||  | |    |       ||      |  | |  | |  | |       |   |  |||||||||||||| |||||  | |||||||||||||| || || |||||||| ||||| || || |||||||| || || |||||||||
----------------------------------------------------ttatgacatttgagaattacaacattttatttccatttctttctgttatttctgcctgattctttctttctgccaacaaaacttaaatcttttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G37190.2 (Glycine max), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                           |   ||    || |  | |||  ||||| | ||| ||  |  || |  ||     |    | |||||   ||    ||      |  |||||  || ||                      |||||||||||||| || ||  | |||||||||||||| || || |||||||| ||||| || || |||||||| ||||| |||||||||
---------------------------tccttatggattatattactacattttattttagtttctttctgttatttctgcct--gtttctttgttttgtgctaacaaaactaaaatcttttattg----------------------cagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G15660.1 (Glycine max), 3'ss of exon 1
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAA-GATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                                                                        | || | | | ||   ||  || | || |          |||| |      |||||     || |  | |||  ||  || |   |||||||||||||| || || |||||||| ||||| || || |||||||| ||||| ||| |||||
----------------------------------------------------------------------------------------gtttggtgtttaatttata-tgattcagttg------agaatgctaagaagTGTGAGCCTAAGTACAGGCTTATCAGGAAAGGAAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTCAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G43190.1 (Glycine max), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                              ||  |  || |  ||  |  |  |  |  |||    |      ||| || || |    ||  | |||         ||| ||||   | |  ||   ||   ||||| || |||||||||||| | || || |||||||| || || |||||||| ||||| || || |||||||| ||||| || ||||||
----------------------------------------------tatctgatatttgagaatgataatatttttttataatgtgt--cttggccataattacatcattttgtgcaagtgaactaaaatatctatctattatat---cagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                           || ||      | ||  |  | |  ||  |  ||  | ||| | |||  | |  |    | |     ||    |||   | |||| |   ||||    || | | ||||||||| | || |||||| | ||||| || ||||| || || |||||||||||||| ||| | |||||| |||| ||||| ||||||
------------------------------------------tttttaaaa--aaatcacgtcttccttttttctttgaactttaattgccctcctctct--ctaccccattttcttcttgcattgaatttgctgtt----tggt-ggcagAATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0151g00900.t01 (Vitis vinifera), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                               | | |  | | |||   ||    ||    ||   || |  |  ||||| ||   | |   |  |  |  ||||  ||   |   | |     |||  |   ||||||||| | || |||||| | || || |||||||| || || ||||| |||||||||||||| |||||| |||| || || ||||||
------------------------------------------acaacaatgtacact-tagtgaacaa--ggaatcttatcttgctttattttgctattcgaaacatgcttctctttctctgaccatagcaact-----tgtc-tgcgcagAATGGATTGGATACCAAGGTGGAAAAGTCAAGGAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ16004 (Selaginella moellendorffii), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                                              | |   | | |  ||||||| ||   || || ||   ||||||  |  ||     ||||   ||   |  || |   |        ||||| ||||||| |||||      | ||||| ||||| ||| |||||||| |||||||||| |||||||||||||| || || ||||||
-------------------------------------------------------------gtgagcttagttcttttgattctcggcgcctt-cg--caaacaacagattt-----ctcaccttggtttcgttttctgttc------cagAACGGACTTGCCACCAGAGAGCAAAAATCGAGGAAGCAGCTCAAGGAGCGGAAGAACAGAGCGAAGAAGATCCGCGGAGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ07954 (Selaginella moellendorffii), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                                              | |   | | |  ||||||| ||   || ||     | ||||      ||    |||||   ||   |  || |  ||        ||||| ||||||| |||||      | ||||| ||||| ||| |||||||| |||||||||| |||||||||||||| || || ||||||
-------------------------------------------------------------gtgagcttagttcttttgattctcggcgccttcgcgagcaacag----att----tctcaccttggtttcgttttccattc------cagAACGGACTTGCCACCAGAGAGCAAAAATCGAGGAAGCAGCTCAAGGAGCGGAAGAACAGAGCGAAGAAGATCCGCGGAGTGAAGAAG

upper sequence: AT5G28060.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ29464 (Selaginella moellendorffii), 3'ss of exon 3
gtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgt---tgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                                                    |  |||   |||  | ||  | ||  |||             ||||  ||| |  ||| ||   ||     |    |  ||  ||||| |||||||  |||| |    |||| || ||||| ||| |||||||||||||||||||||| ||||||||||| || || ||||||
-------------------------------------------------------------------gtgagtgaagtgagct-catggtttctcgac------------ttgcgctctaactctggaagcttttccccttgcatcttttgcagAACGGACTTGCAACCAGGGAGCAGAAGTCGAGGAAGCAGCTCAAGGAGAGGAAGAACAGGGCCAAGAAGATCCGCGGAGTGAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124939744|gb|EL016259.1|EL016259
EST:     ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAGGAAA
genomic: ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAA
EST: gi|125280798|gb|EL294883.1|EL294883
EST:     ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTG
genomic: ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTG
EST: gi|124877461|gb|EH956898.1|EH956898
EST:     TCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAAT
genomic: TCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAAT
EST: gi|124905973|gb|EH980053.1|EH980053
EST:     ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAA
genomic: ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAA
EST: gi|125304289|gb|EL318374.1|EL318374
EST:     CCTAAGTACAGACTTATCAGG                         AGTGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
genomic: CCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
EST: gi|86084565|gb|DR380324.1|DR380324
EST:     ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
genomic: ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
EST: gi|86078425|gb|DR374182.1|DR374182
EST:     ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
genomic: ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
EST: gi|125166852|gb|EL192450.1|EL192450
EST:     AACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAAGGAAACAGATCAAGGAGAG
genomic: AACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAA-GGAAACAGATCAAGGAGAG
EST: gi|86081226|gb|DR376983.1|DR376983
EST:     ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
genomic: ATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
EST: gi|125193763|gb|EL208717.1|EL208717
EST:     AACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAG
genomic: AACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAG
EST: gi|125197851|gb|EL212805.1|EL212805
EST:     TACAGACTTATCAGG                         AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG
genomic: TACAGACTTATCAGGgtaatttctc ... tgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacagAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG
                                     tgttgat  putative branch site (score: 4)
                              aaatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG