1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgggagcactattgcaatttggttaggccacaaagagttaacgctccttatgtttccgcacacgataacacctattttctctacatttctctttatcagGTACCGAAGATGGGGAAGTCTTGAATATCTAGTCCTCTCTATGTCAATATCACGGTTCCACAGCTCAAGCTAGGCTCAAGATTCTGAGTGTCATTACAAC
species | Arabidopsis thaliana |
transcript | AT5G27840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGATTATGAAACCAGCCCCAGCTTCAAGCAGTCATCCTCTCAAGAAG GTACCGAAGATEST: gi|125212333|gb|EL227287.1|EL227287
genomic: TTGAGATTATGAAACCAGCCCCAGCTTCAAGCAGTCATCCTCTCAAGAAGgttagtttct ... tctttatcagGTACCGAAGAT
EST: TCATCCTCTCAAGAAG GTACCGAAGATGGGGAAGTCTTGAATATCTAGTCCTCTCTATGTCAATATC
genomic: TCATCCTCTCAAGAAGgttagtttct ... tctttatcagGTACCGAAGATGGGGAAGTCTTGAATATCTAGTCCTCTCTATGTCAATATC
tccttatgtttccgcacacgataacacctattttctctacatttctctttatcagGTACCGAAGATGGGGAAGTCTTGAATATCTAGTCCTCTCTATGTCAATATCACGGTTCCACAGCTCAAGCTAGGCTCAAGATTCTGAGTGTCATTACAAC
cgataac putative branch site (score: 3)
cctattttctctacat CT-rich tract
tattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggagcactattgcaatttggttaggccacaaagagttaacgctccttatgtttccgcacacgataacacctattttctctacatttctctttatcagGTACCGAAGATGGGGAAGTCTTGAATATCTAGTCCTCTCTATGTCAATATCACGGTTCCACAGCTCAAGCTAGGCTCAAGATTCTGAGTGTCATTACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - -ggttagg
- - - - - - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaca