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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaccttttgtgattttggcataacaacattaattttggttttgtggatgtgtattattgaaaatttggtgtttgcagAAGATTGCTTTTGCAAAGGATGATGAGACGGAGGAGCTGAATCTCATAAACGTGCCTCGGTGTATCGTATCGACTCTCGAGTGTGTTGAGATAAAAGGAT

Basic information

species Arabidopsis thaliana
transcript AT5G27750.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085329|gb|DR381088.1|DR381088
EST:     TCTTGCCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAAAACCTAATCTTG                         AAGATTGCTTTTGCAAAGGATGATGAGACGGAGGAGCTGAATCTCATAAAC
genomic: TCTTGCCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAAAACCTAATCTTGgtaaaacctt ... gtgtttgcagAAGATTGCTTTTGCAAAGGATGATGAGACGGAGGAGCTGAATCTCATAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacattaattttggttttgtggatgtgtattattgaaaatttggtgtttgcagAAGATTGCTTTTGCAAAGGATGATGAGACGGAGGAGCTGAATCTCATAAACGTGCCTCGGTGTATCGTATCGACTCTCGAGTGTGTTGAGATAAAAGGAT
    cattaat  putative branch site (score: 3)
                           tgtattattgaaaatt  TA-rich tract